Group Publications

Publikationer rss feed

2019
 

Emergence and Spread of Basal Lineages of Yersinia pestis during the Neolithic Decline

Rascovan, Nicolás ; Sjögren, Karl-Göran ; Kristiansen, Kristian ; Nielsen, Rasmus ; Willerslev, Eske ; Desnues, Christelle ; Rasmussen, Simon
in: CELL, vol: 176, pages: 295-305

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1016/j.cell.2018.11.005

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Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

Hendriksen, Rene S. ; Munk, Patrick ; Njage, Patrick Murigu Kamau ; van Bunnik, Bram ; McNally, Luke ; Lukjancenko, Oksana ; Röder, Timo ; Nieuwenhuijse, David ; Karlsmose Pedersen, Susanne ; Kjeldgaard, Jette Sejer ; Kaas, Rolf Sommer ; Clausen, Philip Thomas Lanken Conradsen ; Vogt, Josef Korbinian ; Leekitcharoenphon, Pimlapas ; van de Schans, Milou G M ; Zuidema, Tina ; de Roda Husman, Ana Maria ; Rasmussen, Simon ; Petersen, Bent ; Global, Sewage Surveillance project consortium ; Amid, Clara ; Cochrane, Guy ; Sicheritz-Pontén, Thomas ; Schmitt, Heike ; Alvarez, Jorge Raul Matheu ; Aidara-Kane, Awa ; Pamp, Sünje Johanna ; Lund, Ole ; Hald, Tine ; Woolhouse, Mark ; Koopmans, Marion P ; Vigre, Håkan ; Petersen, Thomas Nordahl ; Aarestrup, Frank Møller
in: Nature Communications, vol: 10

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1038/s41467-019-08853-3

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Immunity and mental illness: findings from a Danish population-based immunogenetic study of seven psychiatric and neurodevelopmental disorders

Nudel, Ron ; Benros, Michael E. ; Krebs, Morten Dybdahl ; Allesøe, Rosa Lundbye ; Lemvigh, Camilla Koldbæk ; Bybjerg-Grauholm, Jonas ; Børglum, Anders D. ; Daly, Mark J. ; Nordentoft, Merete ; Mors, Ole ; Hougaard, David M. ; Mortensen, Preben Bo ; Buil, Alfonso ; Werge, Thomas ; Rasmussen, Simon ; Thompson, Wesley K
in: European journal of human genetics

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2019     |    DOI: https://doi.org/10.1038/s41431-019-0402-9

 

MobiSeq: De Novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements

Rey-Iglesia, Alba ; Gopalakrishan, Shyam ; Carøe, Christian ; Alquezar-Planas, David E. ; Nielsen, Anne Ahlmann ; Röder, Timo ; Bruhn Pedersen, Lene ; Naesborg-Nielsen, Christina ; Sinding, Mikkel-Holger S. ; Fredensborg Rath, Martin ; Li, Zhipeng ; Petersen, Bent ; Gilbert, M. Thomas P. ; Bunce, Michael ; Mourier, Tobias ; Hansen, Anders Johannes
in: Molecular Ecology Resources, vol: 19, issue: 2, pages: 512-525

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1111/1755-0998.12984

 

NetSurfP-2.0: Improved prediction of protein structural features by integrated deep learning

Klausen, Michael Schantz ; Jespersen, Martin Closter ; Nielsen, Henrik ; Jensen, Kamilla Kjærgaard ; Jurtz, Vanessa Isabell ; Sønderby, Casper Kaae ; Sommer, Morten Otto Alexander ; Winther, Ole ; Nielsen, Morten ; Petersen, Bent ; Marcatili, Paolo
in: Proteins: Structure, Function, and Bioinformatics, vol: 87, issue: 6, pages: 520-527

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1002/prot.25674

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Stone Age “chewing gum” yields 5,700 year-old human genome and oral microbiome

Jensen, T. Z. T. ; Niemann, J. ; Iversen, K. Højholt ; Fotakis, A.K. ; Gopalakrishnan, S. ; Sinding, M.­H. S. ; Ellegaard, M. R. ; Allentoft, M. E. ; Lanigan, L. T. ; Taurozzi, A. J. ; Nielsen, S. Holtsmark ; Dee, M.W. ; Mortensen, M. N. ; Christensen, M. C. ; Sørensen, S. A. ; Collins, M. J. ; Gilbert, M.T.P. ; Sikora, M. ; Rasmussen, S. ; Schroeder, H.

Type: Working paper

Status: Published     |    Year: 2019

 

The population history of northeastern Siberia since the Pleistocene

Sikora, Martin ; Pitulko, Vladimir V. ; Sousa, Vitor C. ; Allentoft, Morten E. ; Vinner, Lasse ; Rasmussen, Simon ; Margaryan, Ashot ; de Barros Damgaard, Peter ; de la Fuente, Constanza ; Renaud, Gabriel ; Yang, Melinda A. ; Fu, Qiaomei ; Dupanloup, Isabelle ; Giampoudakis, Konstantinos ; Nogués-Bravo, David ; Rahbek, Carsten ; Kroonen, Guus ; Peyrot, Michaël ; McColl, Hugh ; Vasilyev, Sergey V. ; Veselovskaya, Elizaveta ; Gerasimova, Margarita ; Pavlova, Elena Y. ; Chasnyk, Vyacheslav G. ; Nikolskiy, Pavel A. ; Gromov, Andrei V. ; Khartanovich, Valeriy I. ; Moiseyev, Vyacheslav ; Grebenyuk, Pavel S. ; Fedorchenko, Alexander Yu ; Lebedintsev, Alexander I. ; Slobodin, Sergey B. ; Malyarchuk, Boris A. ; Martiniano, Rui ; Meldgaard, Morten ; Arppe, Laura ; Palo, Jukka U. ; Sundell, Tarja ; Mannermaa, Kristiina ; Putkonen, Mikko ; Alexandersen, Verner ; Primeau, Charlotte ; Baimukhanov, Nurbol ; Malhi, Ripan S. ; Sjögren, Karl Göran ; Kristiansen, Kristian ; Wessman, Anna ; Sajantila, Antti ; Lahr, Marta Mirazon ; Durbin, Richard ; Nielsen, Rasmus ; Meltzer, David J. ; Excoffier, Laurent ; Willerslev, Eske
in: Nature, vol: 570, pages: 182-188

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1038/s41586-019-1279-z

2018
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The prehistoric peopling of Southeast Asia

McColl, Hugh ; Racimo, Fernando ; Vinner, Lasse ; Demeter, Fabrice ; Gakuhari, Takashi ; Víctor Moreno-Mayar, J. ; Van Driem, George ; Wilken, Uffe Gram ; Seguin-Orlando, Andaine ; De la Fuente Castro, Constanza ; Wasef, Sally ; Shoocongdej, Rasmi ; Souksavatdy, Viengkeo ; Sayavongkhamdy, Thongsa ; Saidin, Mohd Mokhtar ; Allentoft, Morten E. ; Sato, Takehiro ; Malaspinas, Anna Sapfo ; Aghakhanian, Farhang A. ; Korneliussen, Thorfinn ; Prohaska, Ana ; Margaryan, Ashot ; De Barros Damgaard, Peter ; Kaewsutthi, Supannee ; Lertrit, Patcharee ; Nguyen, Thi Mai Huong ; Hung, Hsiao chun ; Tran, Thi Minh ; Truong, Huu Nghia ; Nguyen, Giang Hai ; Shahidan, Shaiful ; Wiradnyana, Ketut ; Matsumae, Hiromi ; Shigehara, Nobuo ; Yoneda, Minoru ; Ishida, Hajime ; Masuyama, Tadayuki ; Yamada, Yasuhiro ; Tajima, Atsushi ; Shibata, Hiroki ; Toyoda, Atsushi ; Hanihara, Tsunehiko ; Nakagome, Shigeki ; Deviese, Thibaut ; Bacon, Anne Marie ; Duringer, Philippe ; Ponche, Jean Luc ; Shackelford, Laura ; Patole-Edoumba, Elise ; Nguyen, Anh Tuan ; Bellina-Pryce, Bérénice ; Galipaud, Jean Christophe ; Kinaston, Rebecca ; Buckley, Hallie ; Pottier, Christophe ; Rasmussen, Simon ; Higham, Tom ; Foley, Robert A. ; Lahr, Marta Mirazón ; Orlando, Ludovic ; Sikora, Martin ; Phipps, Maude E. ; Oota, Hiroki ; Higham, Charles ; Lambert, David M. ; Willerslev, Eske
in: Science, vol: 361, issue: 6397, pages: 88-92

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1126/science.aat3628

 

137 ancient human genomes from across the Eurasian steppes

De Barros Damgaard, Peter ; Marchi, Nina ; Rasmussen, Simon ; Peyrot, Michaël ; Renaud, Gabriel ; Korneliussen, Thorfinn ; Moreno-Mayar, J. Víctor ; Pedersen, Mikkel Winther ; Goldberg, Amy ; Usmanova, Emma ; Baimukhanov, Nurbol ; Loman, Valeriy ; Hedeager, Lotte ; Pedersen, Anders Gorm ; Nielsen, Kasper ; Afanasiev, Gennady ; Akmatov, Kunbolot ; Aldashev, Almaz ; Alpaslan, Ashyk ; Baimbetov, Gabit ; Bazaliiskii, Vladimir I. ; Beisenov, Arman ; Boldbaatar, Bazartseren ; Boldgiv, Bazartseren ; Dorzhu, Choduraa ; Ellingvag, Sturla ; Erdenebaatar, Diimaajav ; Dajani, Rana ; Dmitriev, Evgeniy ; Evdokimov, Valeriy ; Frei, Karin M. ; Gromov, Andrey ; Goryachev, Alexander ; Hakonarson, Hakon ; Hegay, Tatyana ; Khachatryan, Zaruhi ; Khaskhanov, Ruslan ; Kitov, Egor ; Kolbina, Alina ; Kubatbek, Tabaldiev ; Kukushkin, Alexey ; Kukushkin, Igor ; Lau, Nina ; Margaryan, Ashot ; Merkyte, Inga ; Mertz, Ilya V. ; Mertz, Viktor K. ; Mijiddorj, Enkhbayar ; Moiyesev, Vyacheslav ; Mukhtarova, Gulmira ; Nurmukhanbetov, Bekmukhanbet ; Orozbekova, Z. ; Panyushkina, Irina ; Pieta, Karol ; Smrčka, Václav ; Shevnina, Irina ; Logvin, Andrey ; Sjögren, Karl Göran ; Štolcová, Tereza ; Tashbaeva, Kadicha ; Tkachev, Alexander ; Tulegenov, Turaly ; Voyakin, Dmitriy ; Yepiskoposyan, Levon ; Undrakhbold, Sainbileg ; Varfolomeev, Victor ; Weber, Andrzej ; Kradin, Nikolay ; Allentoft, Morten E. ; Orlando, Ludovic ; Nielsen, Rasmus ; Sikora, Martin ; Heyer, Evelyne ; Kristiansen, Kristian ; Willerslev, Eske
in: Nature, vol: 557, pages: 369-374

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1038/s41586-018-0094-2

 

Accurate genotyping across variant classes and lengths using variant graphs

Sibbesen, Jonas Andreas ; Maretty, Lasse ; Jensen, Jacob Malte ; Petersen, Bent ; Liu, Siyang ; Villesen, Palle ; Skov, Laurits ; Belling, Kirstine ; Theil Have, Christian ; Gonzalez-Izarzugaza, Jose Maria ; Grosjean, Marie ; Bork-Jensen, Jette ; Grove, Jakob ; Dam-Als, Thomas ; Huang, Shujia ; Chang, Yuqi ; Xu, Ruiqi ; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen ; Sun, Jihua ; Cao, Hongzhi ; Ye, Chen ; van Beusekom, Johan ; Espeseth, Thomas ; Flindt, Esben ; Friborg, Rune M. ; Halager, Anders Egerup ; Le Hellard, Stephanie ; Hultman, Christina M. ; Lescai, Francesco ; Li, Shengting ; Lund, Ole ; Løngren, Peter ; Mailund, Thomas ; Matey-Hernandez, María Luisa ; Mors, Ole ; Pedersen, Christian N. S. ; Sicheritz-Pontén, Thomas ; Sullivan, Patrick ; Ali , Syed ; Westergaard, David ; Yadav, Rachita ; Li, Ning ; Xu, Xun ; Hansen, Torben ; Krogh, Anders ; Bolund, Lars ; Sørensen, Thorkild I. A. ; Pedersen, Oluf ; Gupta, Ramneek ; Rasmussen, Simon ; Besenbacher, Søren ; Børglum, Anders D. ; Wang, Jun ; Eiberg, Hans ; Kristiansen, Karsten ; Brunak, Søren ; Schierup, Mikkel Heide
in: Nature Genetics

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1038/s41588-018-0145-5

 

A computational framework to integrate high-throughput '-omics' datasets for the identification of potential mechanistic links

Pedersen, Helle Krogh ; Forslund, Sofia K ; Gudmundsdottir, Valborg ; Petersen, Anders Østergaard ; Hildebrand, Falk ; Hyötyläinen, Tuulia ; Nielsen, Trine ; Hansen, Torben ; Bork, Peer ; Ehrlich, S Dusko ; Brunak, Søren ; Oresic, Matej ; Pedersen, Oluf ; Nielsen, Henrik Bjørn
in: Nature Protocols, vol: 13, pages: 2781-2800

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1038/s41596-018-0064-z

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Ancient hepatitis B viruses from the Bronze Age to the Medieval period

Mühlemann, Barbara ; Jones, Terry C. ; Damgaard, Peter de Barros ; Allentoft, Morten E. ; Shevnina, Irina ; Logvin, Andrey ; Usmanova, Emma ; Panyushkina, Irina P. ; Boldgiv, Bazartseren ; Bazartseren, Tsevel ; Tashbaeva, Kadicha ; Merz, Victor ; Lau, Nina ; Smrčka, Václav ; Voyakin, Dmitry ; Kitov, Egor ; Epimakhov, Andrey ; Pokutta, Dalia ; Vicze, Magdolna ; Price, T. Douglas ; Moiseyev, Vyacheslav ; Hansen, Anders J. ; Orlando, Ludovic ; Rasmussen, Simon ; Sikora, Martin ; Vinner, Lasse ; Osterhaus, Albert D. M. E. ; Smith, Derek J. ; Glebe, Dieter ; Fouchier, Ron A. M. ; Drosten, Christian ; Sjögren, Karl-Göran ; Kristiansen, Kristian ; Willerslev, Eske
in: Nature, vol: 557, issue: 7705, pages: 418-423

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1038/s41586-018-0097-z

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Ancient nuclear genomes enable repatriation of Indigenous human remains

Wright, Joanne L. ; Wasef, Sally ; Heupink, Tim H. ; Westaway, Michael C. ; Rasmussen, Simon ; Pardoe, Colin ; Fourmile, Gudju Gudju ; Young, Michael ; Johnson, Trish ; Slade, Joan ; Kennedy, Roy ; Winch, Patsy ; Pappin, Mary ; Wales, Tapij ; Bates, William "Badger" ; Hamilton, Sharnie ; Whyman, Neville ; van Holst Pellekaan, Sheila ; McAllister, Peter J. ; Taçon, Paul S. C. ; Curnoe, Darren ; Li, Ruiqiang ; Millar, Craig ; Subramanian, Sankar ; Willerslev, Eske ; Malaspinas, Anna-Sapfo ; Sikora, Martin ; Lambert, David M.
in: Science Advances, vol: 4, issue: 12

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1126/sciadv.aau5064

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Ancient pathogen DNA in human teeth and petrous bones

Margaryan, Ashot ; Hansen, Henrik B. ; Rasmussen, Simon ; Sikora, Martin ; Moiseyev, Vyacheslav ; Khoklov, Alexandr ; Epimakhov, Andrey ; Yepiskoposyan, Levon ; Kriiska, Aivar ; Varul, Liivi ; Saag, Lehti ; Lynnerup, Niels ; Willerslev, Eske ; Allentoft, Morten E.
in: Ecology and Evolution, vol: 8, issue: 6, pages: 3534-3542

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1002/ece3.3924

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Antibodies to Intercellular Adhesion Molecule 1-Binding Plasmodium falciparum Erythrocyte Membrane Protein 1-DBLβ Are Biomarkers of Protective Immunity to Malaria in a Cohort of Young Children from Papua New Guinea

Tessema, Sofonias K ; Utama, Digjaya ; Chesnokov, Olga ; Hodder, Anthony N ; Lin, Clara S ; Harrison, G. L. Abby ; Jespersen, Jakob S ; Petersen, Bent ; Tavul, Livingstone ; Siba, Peter ; Kwiatkowski, Dominic ; Lavstsen, Thomas ; Hansen, Diana S ; Oleinikov, Andrew V ; Mueller, Ivo ; Barry, Alyssa E
in: Infection and Immunity, vol: 86, issue: 8

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1128/IAI.00485-17

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Author Correction: 137 ancient human genomes from across the Eurasian steppes

De Barros Damgaard, Peter ; Marchi, Nina ; Rasmussen, Simon ; Peyrot, Michaël ; Renaud, Gabriel ; Korneliussen, Thorfinn ; Moreno-Mayar, J. Víctor ; Pedersen, Mikkel Winther ; Goldberg, Amy ; Usmanova, Emma ; Baimukhanov, Nurbol ; Loman, Valeriy ; Hedeager, Lotte ; Pedersen, Anders Gorm ; Nielsen, Kasper ; Afanasiev, Gennady ; Akmatov, Kunbolot ; Aldashev, Almaz ; Alpaslan, Ashyk ; Baimbetov, Gabit ; Bazaliiskii, Vladimir I. ; Beisenov, Arman ; Boldbaatar, Bazartseren ; Boldgiv, Bazartseren ; Dorzhu, Choduraa ; Ellingvag, Sturla ; Erdenebaatar, Diimaajav ; Dajani, Rana ; Dmitriev, Evgeniy ; Evdokimov, Valeriy ; Frei, Karin M. ; Gromov, Andrey ; Goryachev, Alexander ; Hakonarson, Hakon ; Hegay, Tatyana ; Khachatryan, Zaruhi ; Khaskhanov, Ruslan ; Kitov, Egor ; Kolbina, Alina ; Kubatbek, Tabaldiev ; Kukushkin, Alexey ; Kukushkin, Igor ; Lau, Nina ; Margaryan, Ashot ; Merkyte, Inga ; Mertz, Ilya V. ; Mertz, Viktor K. ; Mijiddorj, Enkhbayar ; Moiyesev, Vyacheslav ; Mukhtarova, Gulmira ; Nurmukhanbetov, Bekmukhanbet ; Orozbekova, Z. ; Panyushkina, Irina ; Pieta, Karol ; Smrčka, Václav ; Shevnina, Irina ; Logvin, Andrey ; Sjögren, Karl Göran ; Štolcová, Tereza ; Taravella, Angela M. ; Tashbaeva, Kadicha ; Tkachev, Alexander ; Tulegenov, Turaly ; Voyakin, Dmitriy ; Yepiskoposyan, Levon ; Undrakhbold, Sainbileg ; Varfolomeev, Victor ; Weber, Andrzej ; Sayres, Melissa A. Wilson ; Kradin, Nikolay ; Allentoft, Morten E. ; Orlando, Ludovic ; Nielsen, Rasmus ; Sikora, Martin ; Heyer, Evelyne ; Kristiansen, Kristian ; Willerslev, Eske
in: Nature, vol: 557

Type: Comment/debate (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1038/s41586-018-0488-1

 

Author Correction: Ancient hepatitis B viruses from the Bronze Age to the Medieval period

Muhlemann, Barbara ; Jones, Terry C ; de Barros Damgaard, Peter ; Allentoft, Morten E ; Shevnina, Irina ; Logvin, Andrey ; Usmanova, Emma ; Panyushkina, Irina P ; Boldgiv, Bazartseren ; Bazartseren, Tsevel ; Tashbaeva, Kadicha ; Merz, Victor ; Lau, Nina ; Smrčka, Vaclav ; Voyakin, Dmitry ; Kitov, Egor ; Epimakhov, Andrey ; Pokutta, Dalia ; Vicze, Magdolna ; Price, T Douglas ; Moiseyev, Vyacheslav ; Hansen, Anders J ; Orlando, Ludovic ; Rasmussen, Simon ; Sikora, Martin ; Vinner, Lasse ; Osterhaus, Albert D M E ; Smith, Derek J ; Glebe, Dieter ; Fouchier, Ron A M ; Drosten, Christian ; Sjogren, Karl-Goran ; Kristiansen, Kristian ; Willerslev, Eske
in: Nature

Type: Comment/debate

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1038/s41586-018-0406-6

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Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios

Matey-Hernandez, María Luisa ; Maretty, Lasse ; Jensen, Jacob Malte ; Petersen, Bent ; Andreas Sibbesen, Jonas ; Liu, Siyang ; Villesen, Palle ; Skov, Laurits ; Belling, Kirstine ; Theil Have, Christian ; Gonzalez-Izarzugaza, Jose Maria ; Grosjean, Marie ; Bork-Jensen, Jette ; Grove, Jakob ; Als, Thomas D. ; Huang, Shujia ; Chang, Yuqi ; Xu, Ruiqi ; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen ; Sun, Jihua ; Cao, Hongzhi ; Ye, Chen ; Beusekom, Johan v. ; Espeseth, Thomas ; Flindt, Esben N. ; Friborg, Rune M. ; Halager, Anders Egerup ; Le Hellard, Stephanie ; Hultman, Christina M. ; Lescai, Francesco ; Li, Shengting ; Lund, Ole ; Løngren, Peter ; Mailund, Thomas ; Mors, Ole ; Pedersen, Christian N. S. ; Sicheritz-Pontén, Thomas ; Sullivan, Patrick F. ; Ali , Syed ; Westergaard, David ; Yadav, Rachita ; Li, Ning ; Xu, Xun ; Hansen, Torben ; Krogh, Anders ; Bolund, Lars ; Sørensen, Thorkild I. A. ; Pedersen, Oluf ; Gupta, Ramneek ; Besenbacher, Søren ; Børglum, Anders D. ; Wang, Jun ; Eiberg, Hans ; Kristiansen, Karsten ; Brunak, Søren ; Schierup, Mikkel Heide ; Izarzugaza, Jose M. G.
in: B M C Bioinformatics, vol: 19

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1186/s12859-018-2239-6

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Biosynthesis of bioactive diterpenoids in the medicinal plant Vitex agnus-castus

Heskes, Allison Maree ; Sundram, Tamil C M ; Boughton, Berin Alain ; Jensen, Niels Bjerg ; Hansen, Nikolaj Lervad ; Crocoll, Christoph ; Cozzi, Federico ; Rasmussen, Simon ; Hamberger, Britta ; Hamberger, Björn ; Stærk, Dan ; Møller, Birger Lindberg ; Pateraki, Irini
in: Plant Journal, vol: 93, issue: 5, pages: 943-958

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1111/tpj.13822

 

Early human dispersals within the Americas

Moreno-Mayar, J Víctor ; Vinner, Lasse ; de Barros Damgaard, Peter ; de la Fuente, Constanza ; Chan, Jeffrey ; Spence, Jeffrey P ; Allentoft, Morten E ; Vimala, Tharsika ; Racimo, Fernando ; Pinotti, Thomaz ; Rasmussen, Simon ; Margaryan, Ashot ; Iraeta Orbegozo, Miren ; Mylopotamitaki, Dorothea ; Wooller, Matthew ; Bataille, Clement ; Becerra-Valdivia, Lorena ; Chivall, David ; Comeskey, Daniel ; Devièse, Thibaut ; Grayson, Donald K ; George, Len ; Harry, Harold ; Alexandersen, Verner ; Primeau, Charlotte ; Erlandson, Jon ; Rodrigues-Carvalho, Claudia ; Reis, Silvia ; Bastos, Murilo Q R ; Cybulski, Jerome ; Vullo, Carlos ; Morello, Flavia ; Vilar, Miguel ; Wells, Spencer ; Gregersen, Kristian ; Hansen, Kasper Lykke ; Lynnerup, Niels ; Mirazón Lahr, Marta ; Kjær, Kurt ; Strauss, André ; Alfonso-Durruty, Marta ; Salas, Antonio ; Schroeder, Hannes ; Higham, Thomas ; Malhi, Ripan S ; Rasic, Jeffrey T ; Souza, Luiz ; Santos, Fabricio R ; Malaspinas, Anna-Sapfo ; Nielsen, Rasmus ; Song, Yun S ; Meltzer, David J. ; Willerslev, Eske
in: Science, vol: 362, issue: 6419

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1126/science.aav2621

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Erratum to: Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

Mak, Sarah Siu Tze ; Gopalakrishnan, Shyam ; Carøe, Christian ; Geng, Chunyu ; Liu, Shanlin ; Sinding, Mikkel-Holger S. ; Kuderna, Lukas F. K. ; Zhang, Wenwei ; Fu, Shujin ; Vieira, Filipe G. ; Germonpré, Mietje ; Bocherens, Hervé ; Fedorov, Sergey ; Petersen, Bent ; Sicheritz-Pontén, Thomas ; Marques-Bonet, Tomas ; Zhang, Guojie ; Jiang, Hui ; Gilbert, M. Thomas P.
in: GigaScience, vol: 7, issue: 12

Type: Comment/debate

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1093/gigascience/giy151

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Improved de novo genomic assembly for the domestic donkey

Renaud, Gabriel ; Petersen, Bent ; Seguin-Orlando, Andaine ; Bertelsen, Mads Frost ; Waller, Andrew ; Newton, Richard ; Paillot, Romain ; Bryant, Neil ; Vaudin, Mark ; Librado, Pablo ; Orlando, Ludovic
in: Science Advances, vol: 4, issue: 4

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1126/sciadv.aaq0392

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Improved ontology for eukaryotic single-exon coding sequences in biological databases

Jorquera, Roddy ; González, Carolina ; Clausen, Philip ; Petersen, Bent ; Holmes, David S
in: Database, vol: 2018, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1093/database/bay089

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Interspecific Gene Flow Shaped the Evolution of the Genus Canis

Gopalakrishnan, Shyam ; Sinding, Mikkel Holger S. ; Ramos-Madrigal, Jazmín ; Niemann, Jonas ; Samaniego Castruita, Jose A. ; Vieira, Filipe G. ; Carøe, Christian ; Montero, Marc de Manuel ; Kuderna, Lukas ; Serres, Aitor ; González-Basallote, Víctor Manuel ; Liu, Yan Hu ; Wang, Guo Dong ; Marques-Bonet, Tomas ; Mirarab, Siavash ; Fernandes, Carlos ; Gaubert, Philippe ; Koepfli, Klaus Peter ; Budd, Jane ; Rueness, Eli Knispel ; Heide-Jørgensen, Mads Peter ; Petersen, Bent ; Sicheritz-Ponten, Thomas ; Bachmann, Lutz ; Wiig, Øystein ; Hansen, Anders J. ; Gilbert, M. Thomas P.
in: Current Biology, vol: 28, issue: 21, pages: 3441-3449

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1016/j.cub.2018.08.041

 

Metagenomics in wine fermentation

Klincke, Franziska

Type: Ph.D. thesis

Status: Published     |    Year: 2018


https://www.bioinformatics.dtu.dk/research2018/research-groups/metagenomics/publikationsliste
16 SEPTEMBER 2019