Group publications

 

Publikationer rss feed

2019
 

A Brief History of Protein Sorting Prediction

Nielsen, Henrik ; Tsirigos, Konstantinos D. ; Brunak, Søren ; von Heijne, Gunnar
in: Protein Journal, vol: 38, issue: 3, pages: 200-216

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1007/s10930-019-09838-3

  PDF

Discovery of biomarkers for glycaemic deterioration before and after the onset of type 2 diabetes: descriptive characteristics of the epidemiological studies within the IMI DIRECT Consortium

Koivula, Robert W. ; Forgie, Ian M. ; Kurbasic, Azra ; Viñuela, Ana ; Heggie, Alison ; Giordano, Giuseppe N. ; Hansen, Tue H. ; Hudson, Michelle ; Koopman, Anitra D. M. ; Rutters, Femke ; Siloaho, Maritta ; Allin, Kristine H. ; Brage, Søren ; Brorsson, Caroline A. ; Dawed, Adem Y. ; De Masi, Federico ; Groves, Christopher J. ; Kokkola, Tarja ; Mahajan, Anubha ; Perry, Mandy H. ; Rauh, Simone P. ; Ridderstråle, Martin ; Teare, Harriet J. A. ; Thomas, E. Louise ; Tura, Andrea ; Vestergaard, Henrik ; White, Tom ; Adamski, Jerzy ; Bell, Jimmy D. ; Beulens, Joline W. ; Brunak, Søren ; Dermitzakis, Emmanouil T. ; Froguel, Philippe ; Frost, Gary ; Gupta, Ramneek ; Hansen, Torben ; Hattersley, Andrew ; Jablonka, Bernd ; Kaye, Jane ; Laakso, Markku ; McDonald, Timothy J. ; Pedersen, Oluf ; Schwenk, Jochen M. ; Pavo, Imre ; Mari, Andrea ; McCarthy, Mark I. ; Ruetten, Hartmut ; Walker, Mark ; Pearson, Ewan ; Franks, Paul W. ; ,
in: Diabetologia, vol: 62, issue: 9, pages: 1601-1615

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1007/s00125-019-4906-1

 

Genetic predisposition to PEG-asparaginase hypersensitivity in children treated according to NOPHO ALL2008

Højfeldt, Sofie G. ; Wolthers, Benjamin O. ; Tulstrup, Morten ; Abrahamsson, Jonas ; Gupta, Ramneek ; Harila-Saari, Arja ; Heyman, Mats ; Henriksen, Louise T. ; Jónsson, Òlafur G. ; Lähteenmäki, Päivi M. ; Lund, Bendik ; Pruunsild, Kaie ; Vaitkeviciene, Goda ; Schmiegelow, Kjeld ; Albertsen, Birgitte K.
in: British Journal of Haematology, vol: 184, issue: 3, pages: 405-417

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1111/bjh.15660

  PDF

Origin of fungal biomass degrading enzymes: Evolution, diversity and function of enzymes of early lineage fungi

Lange, Lene ; Pilgaard, Bo ; Herbst, Florian-Alexander ; Busk, Peter Kamp ; Gleason, Frank ; Pedersen, Anders Gorm
in: Fungal Biology Reviews, vol: 33, issue: 1, pages: 82-97

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1016/j.fbr.2018.09.001

 

Predicting eukaryotic protein secretion without signals

Nielsen, Henrik ; Petsalaki, Eirini I. ; Zhao, Linlin ; Stühler, Kai
in: B B A - Proteins and Proteomics

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2019     |    DOI: https://doi.org/10.1016/j.bbapap.2018.11.011

 

Semi-supervised learning of Hidden Markov Models for biological sequence analysis

Tamposis, Ioannis A. ; Tsirigos, Konstantinos D. ; Theodoropoulou, Margarita C. ; Kontou, Panagiota I. ; Bagos, Pantelis G.
in: Bioinformatics (Online), vol: 35, issue: 13, pages: 2208-2215

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1093/bioinformatics/bty910

 

SignalP 5.0 improves signal peptide predictions using deep neural networks

Almagro Armenteros, Jose Juan ; Tsirigos, Konstantinos D. ; Sønderby, Casper Kaae ; Petersen, Thomas Nordahl ; Winther, Ole ; Brunak, Søren ; von Heijne, Gunnar ; Nielsen, Henrik
in: Nature Biotechnology, vol: 37, pages: 420-423

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1038/s41587-019-0036-z

  PDF

The oncoprotein TBX3 is controlling severity in experimental arthritis

Sardar, Samra ; Kerr, Alish ; Vaartjes, Daniëlle ; Moltved, Emilie Riis ; Karosiene, Edita ; Gupta, Ramneek ; Andersson, Åsa
in: Arthritis Research & Therapy, vol: 21, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1186/s13075-018-1797-3

  PDF

Trypsin encoding PRSS1-PRSS2 variation influence the risk of asparaginase-associated pancreatitis in children with acute lymphoblastic leukemia: a Ponte di Legno toxicity working group report

Wolthers, Benjamin O. ; Frandsen, Thomas L. ; Patel, Chirag J ; Abaji, Rachid ; Attarbaschi, Andishe ; Barzilai, Shlomit ; Colombini, Antonella ; Escherich, Gabriele ; Grosjean, Marie ; Krajinovic, Maja ; Larsen, Eric ; Liang, Der-Cherng ; Möricke, Anja ; Rasmussen, Kirsten K. ; Samarasinghe, Sujith ; Silverman, Lewis B. ; van der Sluis, Inge M. ; Stanulla, Martin ; Tulstrup, Morten ; Yadav, Rachita ; Yang, Wenjian ; Zapotocka, Ester ; Gupta, Ramneek ; Schmiegelow, Kjeld
in: Haematologica, vol: 104, issue: 3, pages: 556-563

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.3324/haematol.2018.199356

  PDF

Whole grain-rich diet reduces body weight and systemic low-grade inflammation without inducing major changes of the gut microbiome: a randomised cross-over trial

Roager, Henrik Munch ; Vogt, Josef Korbinian ; Kristensen, Mette ; Hansen, Lea Benedicte S ; Ibrügger, Sabine ; Mærkedahl, Rasmus B ; Bahl, Martin Iain ; Lind, Mads Vendelbo ; Nielsen, Rikke Linnemann ; Frøkiær, Hanne ; Gøbel, Rikke Juul ; Landberg, Rikard ; Ross, Alastair B ; Brix, Susanne ; Holck, Jesper ; Meyer, Anne S. ; Sparholt, Morten H ; Christensen, Anders F ; Carvalho, Vera ; Holst, Jens Juul ; Rumessen, Jüri Johannes ; Linneberg, Allan ; Sicheritz-Pontén, Thomas ; Dalgaard, Marlene Danner ; Blennow, Andreas ; Frandsen, Henrik Lauritz ; Villas-Bôas, Silas Granato ; Kristiansen, Karsten ; Vestergaard, Henrik ; Hansen, Torben ; Ekstrøm, Claus T ; Ritz, Christian ; Nielsen, Henrik Bjørn ; Pedersen, Oluf Borbye ; Gupta, Ramneek ; Lauritzen, Lotte ; Licht, Tine Rask
in: Gut, vol: 68, issue: 1, pages: 83-93

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1136/gutjnl-2017-314786


https://www.bioinformatics.dtu.dk/research2018/research-groups/disease-intelligence-and-molecular-evolution1/gruppens-publikationer
16 SEPTEMBER 2019