Group publications

 

Publikationer rss feed

2019
 

Analysis of Mass Cytometry Data

Pedersen, Christina B. ; Olsen, Lars R.
part of: Mass Cytometry: Methods and Protocols, pages: 267-279, 2019, Springer

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1007/978-1-4939-9454-0_17

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BioReader: a text mining tool for performing classification of biomedical literature

Simon, Christian ; Davidsen, Kristian ; Hansen, Christina ; Seymour, Emily ; Barnkob, Mike Bogetofte ; Olsen, Lars Rønn
in: BMC Bioinformatics, vol: 19, issue: S13, pages: 165-170

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1186/s12859-019-2607-x

 

Computational Methods for Identification of T Cell Neoepitopes in Tumors

Jurtz, Vanessa Isabell ; Olsen, Lars Rønn
part of: Cancer Bioinformatics, pages: 157-172, 2019, Springer

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1007/978-1-4939-8868-6_9

 

Getting the Most from Your High-Dimensional Cytometry Data

Olsen, Lars R. ; Pedersen, Christina B. ; Leipold, Michael D. ; Maecker, Holden T.
in: Immunity, vol: 50, issue: 3, pages: 535-536

Type: Letter (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1016/j.immuni.2019.02.015

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Immunity and mental illness: findings from a Danish population-based immunogenetic study of seven psychiatric and neurodevelopmental disorders

Nudel, Ron ; Benros, Michael E. ; Krebs, Morten Dybdahl ; Allesøe, Rosa Lundbye ; Lemvigh, Camilla Koldbæk ; Bybjerg-Grauholm, Jonas ; Børglum, Anders D. ; Daly, Mark J. ; Nordentoft, Merete ; Mors, Ole ; Hougaard, David M. ; Mortensen, Preben Bo ; Buil, Alfonso ; Werge, Thomas ; Rasmussen, Simon ; Thompson, Wesley K
in: European journal of human genetics

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2019     |    DOI: https://doi.org/10.1038/s41431-019-0402-9

 

Publisher Correction: Clonal analysis of Salmonella-specific effector T cells reveals serovar-specific and cross-reactive T cell responses

Napolitani, Giorgio ; Teng, Karen Wei Weng ; Gibani, Malick M. ; Kurupati, Prathiba ; Rei, Margarida ; Aulicino, Anna ; Preciado-Llanes, Lorena ; Wong, Michael Thomas ; Becht, Etienne ; Howson, Lauren ; de Haas, Paola ; Salio, Mariolina ; Blohmke, Christoph J. ; Olsen, Lars Rønn ; Pinto, David Miguel Susano ; Scifo, Laura ; Jones, Claire ; Dobinson, Hazel ; Campbell, Danielle ; Juel, Helene B. ; Thomaides-Brears, Helena ; Pickard, Derek ; Bumann, Dirk ; Baker, Stephen ; Dougan, Gordon ; Simmons, Alison ; Gordon, Melita A. ; Newell, Evan William ; Pollard, Andrew J. ; Cerundolo, Vincenzo
in: Nature Immunology, vol: 20

Type: Journal article

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1038/s41590-019-0357-6

 

RNase H-dependent PCR-enabled T-cell receptor sequencing for highly specific and efficient targeted sequencing of T-cell receptor mRNA for single-cell and repertoire analysis

Li, Shuqiang ; Sun, Jing ; Allesøe, Rosa Lundbye ; Datta, Krishnalekha ; Bao, Yun ; Oliveira, Giacomo ; Forman, Juliet ; Jin, Roger ; Olsen, Lars Rønn ; Keskin, Derin B. ; Shukla, Sachet A. ; Wu, Catherine J. ; Livak, Kenneth J.
in: Nature Protocols, vol: 14, pages: 2571-2594

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1038/s41596-019-0195-x

 

The anatomy of single cell mass cytometry data

Olsen, Lars Rønn ; Leipold, Michael D. ; Pedersen, Christina B. ; Maecker, Holden Terry
in: Cytometry. Part A, vol: 95, issue: 2, pages: 156-172

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1002/cyto.a.23621

2018
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Direct whole-genome sequencing of Plasmodium falciparum specimens from dried erythrocyte spots

Nag, Sidsel ; Kofoed, Poul Erik ; Ursing, Johan ; Lemvigh, Camilla Koldbæk ; Allesøe, Rosa Lundbye ; Rodrigues, Amabelia ; Svendsen, Christina Aaby ; Jensen, Jacob Dyring ; Alifrangis, Michael ; Lund, Ole ; Møller Aarestrup, Frank
in: Malaria Journal, vol: 17, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1186/s12936-018-2232-6

 

Clonal analysis of Salmonella-specific effector T cells reveals serovar-specific and cross-reactive T cell responses

Napolitani, Giorgio ; Kurupati, Prathiba ; Teng, Karen Wei Weng ; Gibani, Malick M. ; Rei, Margarida ; Aulicino, Anna ; Preciado-Llanes, Lorena ; Wong, Michael Thomas ; Becht, Etienne ; Howson, Lauren ; de Haas, Paola ; Salio, Mariolina ; Blohmke, Christoph J. ; Olsen, Lars Rønn ; Pinto, David Miguel Susano ; Scifo, Laura ; Jones, Claire ; Dobinson, Hazel ; Campbell, Danielle ; Juel, Helene B. ; Thomaides-Brears, Helena ; Pickard, Derek ; Bumann, Dirk ; Baker, Stephen ; Dougan, Gordon ; Simmons, Alison ; Gordon, Melita A. ; Newell, Evan William ; Pollard, Andrew J. ; Cerundolo, Vincenzo
in: Nature Immunology, vol: 19, issue: 7, pages: 1-13

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1038/s41590-018-0133-z


https://www.bioinformatics.dtu.dk/research2018/research-groups/cancer-genomics/gruppens-publikationer
16 SEPTEMBER 2019