Ole Lund

Ole Lund

Professor

DTU BIOINFORMATICS
Department of Bio and Health Informatics

Genomic Epidemiology
DTU Bioinformatics Employees

Technical University of Denmark

Kemitorvet

Building 208, room 015

2800 Kgs. Lyngby

Home page

Request a vCard via e-mail.

Publications
Projects
Courses
DTU news
Loading

Publications rss feed

2017
  PDF

Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods

Ahrenfeldt, Johanne ; Skaarup, Carina ; Hasman, Henrik ; Pedersen, Anders Gorm ; Aarestrup, Frank Møller ; Lund, Ole
in journal: BMC Genomics (ISSN: 1471-2164) (DOI: http://dx.doi.org/10.1186/s12864-016-3407-6), vol: 18, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1186/s12864-016-3407-6

 

Patterns of infections, aetiological agents, and antimicrobial resistance at a tertiary care hospital in northern Tanzania

Kumburu, Happiness Houka ; Sonda, Tolbert ; Mmbaga, Blandina Theophil ; Alifrangis, Michael ; Lund, Ole ; Kibiki, Gibson ; Aarestrup, Frank Møller
in journal: Tropical Medicine & International Health (ISSN: 1360-2276) (DOI: http://dx.doi.org/10.1111/tmi.12836), vol: 22, issue: 4, pages: 454-464, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1111/tmi.12836

 

Norwegian patients and retail chicken meat share cephalosporin-resistant Escherichia coli and IncK/blaCMY-2 resistance plasmids

Berg, E. S. ; Wester, A. L. ; Ahrenfeldt, Johanne ; Mo, S. S. ; Slettemeås, J. S. ; Steinbakk, M ; Samuelsen, Ø. ; Grude, N. ; Simonsen, G. S. ; Løhr, I. H. ; Jørgensen, S. B. ; Tofteland, S. ; Lund, Ole ; Dahle, U. R. ; Sunde, M.
in journal: Clinical Microbiology and Infection (ISSN: 1198-743X) (DOI: http://dx.doi.org/10.1016/j.cmi.2016.12.035), vol: 23, issue: 6, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.cmi.2016.12.035

  PDF

Perturbed CD8+ T cell TIGIT/CD226/PVR axis despite early initiation of antiretroviral treatment in HIV infected individuals

Tauriainen, Johanna ; Scharf, Lydia ; Frederiksen, Juliet Wairimu ; Naji, Ali ; Ljunggren, Hans-Gustaf ; Sönnerborg, Anders ; Lund, Ole ; Reyes-Terán, Gustavo ; Hecht, Frederick Mm ; Deeks, Steven G. ; Betts, Michael R. ; Buggert, Marcus ; Karlsson, Annika C.
in journal: Scientific Reports (ISSN: 2045-2322) (DOI: http://dx.doi.org/10.1038/srep40354), vol: 7, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1038/srep40354

  PDF

ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping

Hansen, Christian Skjødt ; Østerbye, Thomas ; Marcatili, Paolo ; Lund, Ole ; Buus, Søren ; Nielsen, Morten
in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0168453), vol: 12, issue: 1, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pone.0168453

  PDF

Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease

Joensen, Katrine Grimstrup ; Engsbro, A L Ø ; Lukjancenko, Oksana ; Kaas, Rolf Sommer ; Lund, Ole ; Westh, H. ; Aarestrup, Frank Møller
in journal: European Journal of Clinical Microbiology & Infectious Diseases (ISSN: 0934-9723) (DOI: http://dx.doi.org/10.1007/s10096-017-2947-2), vol: 36, issue: 7, pages: 1325-1338, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1007/s10096-017-2947-2

  PDF

MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads

Petersen, Thomas Nordahl ; Lukjancenko, Oksana ; Thomsen, Martin Christen Frølund ; Sperotto, Maria Maddalena ; Lund, Ole ; Aarestrup, Frank Møller ; Sicheritz-Pontén, Thomas
in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0176469), vol: 12, issue: 5, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pone.0176469

 

Erratum to: Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease

Joensen, Katrine Grimstrup ; Engsbro, A. L. Ø. ; Lukjancenko, Oksana ; Kaas, Rolf Sommer ; Lund, Ole ; Westh, H. ; Aarestrup, Frank Møller
in journal: European Journal of Clinical Microbiology & Infectious Diseases (ISSN: 0934-9723) (DOI: http://dx.doi.org/10.1007/s10096-017-2993-9), vol: 36, issue: 7, pages: 1339-1342, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1007/s10096-017-2993-9

  PDF

High throughput resistance profiling of Plasmodium falciparum infections based on custom dual indexing and Illumina next generation sequencing-technology

Nag, Sidsel ; Dalgaard, Marlene Danner ; Kofoed, Poul-Erik ; Ursing, Johan ; Crespo, Marina ; Andersen, Lee O'Brien ; Aarestrup, Frank Møller ; Lund, Ole ; Alifrangis, Michael
in journal: Scientific Reports (ISSN: 2045-2322) (DOI: http://dx.doi.org/10.1038/s41598-017-02724-x), vol: 7, issue: 1, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1038/s41598-017-02724-x

 

Development of a web tool for Escherichia coli sub-typing based on fimH alleles

Roer, Louise ; Tchesnokova, Veronika ; Allesøe, Rosa Lundbye ; Muradova, Mariya ; Chattopadhyay, Sujay ; Ahrenfeldt, Johanne ; Thomsen, Martin Christen Frølund ; Lund, Ole ; Hansen, Frank ; Hammerum, Anette Marie ; Sokurenko, Evgeni ; Hasman, Henrik
in journal: Journal of Clinical Microbiology (ISSN: 0095-1137) (DOI: http://dx.doi.org/10.1128/JCM.00737-17), 2017

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2017     |    DOI: http://dx.doi.org/10.1128/JCM.00737-17