Group publications

 

Publikationer rss feed

2017
 

MIToS.jl: mutual information tools for protein sequence analysis in the Julia language

Zea, Diego J. ; Anfossi, Diego ; Nielsen, Morten ; Marino-Buslje, Cristina
in journal: Bioinformatics (ISSN: 1367-4803) (DOI: http://dx.doi.org/10.1093/bioinformatics/btw646), vol: 33, issue: 4, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1093/bioinformatics/btw646

 

Comparative proteomics of oxidative stress response of Lactobacillus acidophilus NCFM reveals effects on DNA repair and cysteine de novo synthesis

Calderini, Elia ; Celebioglu, Hasan Ufuk ; Villarroel, Julia ; Jacobsen, Susanne ; Svensson, Birte ; Pessione, Enrica
in journal: Proteomics (ISSN: 1615-9853) (DOI: http://dx.doi.org/10.1002/pmic.201600178), vol: 17, issue: 5, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1002/pmic.201600178

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ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping

Hansen, Christian Skjødt ; Østerbye, Thomas ; Marcatili, Paolo ; Lund, Ole ; Buus, Søren ; Nielsen, Morten
in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0168453), vol: 12, issue: 1, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pone.0168453

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MHC-I Ligand Discovery Using Targeted Database Searches of Mass Spectrometry Data: Implications for T-Cell Immunotherapies

Murphy, J. Patrick ; Konda, Prathyusha ; Kowalewski, Daniel J. ; Schuster, Heiko ; Clements, Derek ; Kim, Youra ; Cohen, Alejandro M. ; Sharif, Tanveer ; Nielsen, Morten ; Stevanovic, Stefan ; Lee, Patrick W. ; Gujar, Shashi
in journal: Journal of Proteome Research (ISSN: 1535-3893) (DOI: http://dx.doi.org/10.1021/acs.jproteome.6b00971), vol: 16, issue: 4, pages: 1806-1816, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1021/acs.jproteome.6b00971

 

Breaking confinement: unconventional peptide presentation by major histocompatibility (MHC) class I allele HLA-A*02:01

Remesh, Soumya G. ; Andreatta, Massimo ; Ying, Ge ; Kaever, Thomas ; Nielsen, Morten ; McMurtrey, Curtis P. ; Hildebrand, William ; Peters, Bjoern ; Zajonc, Dirk M.
in journal: Journal of Biological Chemistry (ISSN: 0021-9258) (DOI: http://dx.doi.org/10.1074/jbc.M117.776542), vol: 292, issue: 13, pages: 5262-5270, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1074/jbc.M117.776542

 

MuPeXI: prediction of neo-epitopes from tumor sequencing data

Bjerregaard, Anne-Mette ; Nielsen, Morten ; Hadrup, Sine Reker ; Szallasi, Zoltan Imre ; Eklund, Aron Charles
in journal: Cancer Immunology, Immunotherapy (ISSN: 0340-7004) (DOI: http://dx.doi.org/10.1007/s00262-017-2001-3), vol: 66, issue: 9, pages: 1123–1130, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1007/s00262-017-2001-3

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Positive diversifying selection is a pervasive adaptive force throughout the Drosophila radiation

Cicconardi, Francesco ; Marcatili, Paolo ; Arthofer, Wolfgang ; Schlick-Steiner, Birgit C ; Steiner, Florian M
in journal: Molecular Phylogenetics and Evolution (ISSN: 1055-7903) (DOI: http://dx.doi.org/10.1016/j.ympev.2017.04.023), vol: 112, pages: 230-243, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1016/j.ympev.2017.04.023

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BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes

Jespersen, Martin Closter ; Peters, Bjoern ; Nielsen, Morten ; Marcatili, Paolo
in journal: Nucleic Acids Research (ISSN: 0305-1048) (DOI: http://dx.doi.org/10.1093/nar/gkx346), vol: 45, issue: W1, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1093/nar/gkx346

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Citrullination only infrequently impacts peptide binding to HLA class II MHC

Sidney, John ; Becart, Stephane ; Zhou, Mimi ; Duffy, Karen ; Lindvall, Mikaela ; Moore, Erin C ; Moore, Eugene L ; Rao, Tadimeti ; Rao, Navin ; Nielsen, Morten ; Peters, Bjoern ; Sette, Alessandro ; Goldberg, Anna Carla (Editor)
in journal: P L o S One (ISSN: 1932-6203) (DOI: http://dx.doi.org/10.1371/journal.pone.0177140), vol: 12, issue: 5, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1371/journal.pone.0177140

 

Machine Learning Reveals a Non-Canonical Mode of Peptide Binding to MHC class II Molecules

Andreatta, Massimo ; Jurtz, Vanessa Isabell ; Kaever, Thomas ; Sette, Alessandro ; Peters, Bjoern ; Nielsen, Morten
in journal: Immunology (ISSN: 0019-2805) (DOI: http://dx.doi.org/10.1111/imm.12763), pages: 255-264, 2017

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: http://dx.doi.org/10.1111/imm.12763


http://www.bioinformatics.dtu.dk/english/research_new/health-informatics/immunoinformatics-and-machine-learning/gruppens-publikationer
16 DECEMBER 2017